Understanding Your Gut Bacteria

The bacteria in our gut microbiome play a crucial role in maintaining our overall health and hormone balance. The gut microbiome is a complex and diverse community of microorganisms that resides in the GI tract. While it consists of various microorganisms like bacteria, viruses, and fungi, bacteria make up the majority of the gut microbiome and that’s what we will focus on in this blog post.

What Our Gut Bacteria Do

Have you ever wondered what the heck the bacteria in your gut actually do? It’s quite a bit actually and ranges from helping us digest and absorb our food to protecting us against pathogens and more!

Digestion and Fermentation: Gut bacteria help in breaking down complex carbohydrates, fibers, and other indigestible compounds that our own digestive enzymes cannot process. Through fermentation, they convert these substances into short-chain fatty acids (SCFAs) and other beneficial metabolites that can be absorbed by our body and contribute to energy production.

Nutrient Absorption: Certain gut bacteria aid in the absorption of essential nutrients, such as certain vitamins (e.g., B vitamins) and minerals (e.g., magnesium).

Immune System Regulation: The gut microbiome plays a significant role in training and modulating our immune system. It helps to educate immune cells and regulate their responses, contributing to a balanced immune function.

Protection Against Pathogens: Beneficial gut bacteria can compete with harmful microorganisms and prevent them from colonizing the gut, reducing the risk of infections.

Gut Barrier Integrity: The gut microbiome is involved in maintaining the integrity of the intestinal barrier, which helps prevent the entry of harmful substances from the gut into the bloodstream.

Metabolism and Weight Regulation: Certain gut bacteria have been linked to metabolic health and body weight regulation. An imbalance in the gut microbiome has been associated with conditions like obesity and metabolic syndrome.

Gut-Brain Axis: The gut and the brain are connected through the gut-brain axis. The gut microbiome can influence brain function and behavior through various communication pathways, affecting mood, cognition, and stress responses. Inflammation in the gut can also lead to inflammation in the brain, known as neuroinflammation. This is part of the root cause for mental health conditions.

Synthesis of Bioactive Compounds: Some gut bacteria produce bioactive compounds like neurotransmitters and other signaling molecules that can influence various physiological processes.

Gut Motility: Gut bacteria can influence the movement of the digestive tract, affecting how quickly or slowly food passes through the system.

Fermentation of Non-Digestible Fiber: The fermentation of dietary fiber produces SCFAs, which play a role in maintaining gut health and have been associated with various health benefits.

We also have a whole class of bacteria that activate and deactivate estrogen and have a big impact on our hormones. I cover this in more detail in the full episode.

What Impacts Our Gut Microbiome?

The balance of bacteria in our gut microbiome can be influenced by a variety of factors, including:

Nutrition: The type of food we eat can have a significant impact on the composition of our gut microbiome. A diet rich in fiber and diverse plant-based foods tends to promote a more diverse and beneficial gut microbiome. In contrast, a diet high in processed foods, excessive sugar, and excessive PUFAs can lead to an imbalance in the gut microbiome, favoring the growth of less beneficial bacteria. It’s almost important to note that digestion plays a big role in this. If our digestion is not optimal and we cannot break down foods rich in fiber, those will not be beneficial for our gut microbiome.

Antibiotics: Antibiotics are designed to kill harmful bacteria that cause infections, but they can also affect the beneficial bacteria in the gut. Overuse or inappropriate use of antibiotics can disrupt the balance of the gut microbiome, potentially leading to a temporary or long-term alteration in the microbial community.

Probiotics and Prebiotics: Probiotics are live beneficial bacteria that can be consumed through certain foods or supplements, while prebiotics are non-digestible fibers that serve as food for beneficial bacteria. Both probiotics and prebiotics can influence the balance of the gut microbiome positively.

Age: The gut microbiome composition changes throughout life, with distinct microbial patterns at different stages of development. For example, the gut microbiome of infants is different from that of adults, and it continues to evolve as we age.

Birth Method: The method of delivery during childbirth can affect the initial colonization of the gut microbiome in infants. Babies born vaginally tend to have a gut microbiome more similar to their mother’s vaginal and gut microbiota, while babies born via cesarean section have a gut microbiome more resembling the hospital environment. This can actually be improved

Breastfeeding: Breast milk contains beneficial compounds that can support the growth of specific bacteria in the infant’s gut, contributing to a healthy gut microbiome.

Stress and Mental Health: Stress and mental health conditions can impact the gut-brain axis, affecting gut motility and the composition of the gut microbiome.

Medications: Besides antibiotics, certain medications, such as proton pump inhibitors (PPIs), nonsteroidal anti-inflammatory drugs (NSAIDs), and some other drugs, can also influence the gut microbiome.

Illness and Infections: Various infections and diseases can cause temporary or long-term disruptions to the gut microbiome, leading to imbalances.

Lifestyle Factors: Smoking, alcohol consumption, sleep patterns, and physical activity levels can also have effects on the gut microbiome.

While many people reach out to me asking if they should do a parasite cleanse to fix their gut health because they have x, y, z symptoms, my first question is always are you doing the basics? Eating enough, managing stress, getting sleep when it’s dark, relaxing at your meals, etc. If not, doing deeper gut work may not actually help rebalance your gut in the long term.

If you want to learn even more about gut health, listen to my podcast episode gut health 101!


reminder: i’m currently taking on 1:1 clients. if you’d like to explore what it would be like to work together and if we are a good fit, fill out this form to get more details!​

Amanda Montalvo

Amanda Montalvo is a women's health dietitian who helps women find the root cause of hormone imbalances and regain healthy menstrual cycles.

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